#paperreview Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan by Pomponio et al., in NeuroImage. Paper: https://www.sciencedirect.com/science/article/pii/S1053811919310419?via%3Dihub#appsec1 Website: https://rpomponio.shinyapps.io/neuro_lifespan/ Combat in R: https://rdrr.io/cran/swamp/man/combat.html Join us live every Monday morning at 9:30am Paris time: https://www.clinicalneuroanatomyseminars.com//neuroccino #combat #lifespan ------- CHAPTERS ------- 0:00 - Intro 0:00:50 - Paper: Harmonization of large MRI datasets 0:19:00 - Paper discussion

#Paperpitch Brain pathology recapitulates physiology: A network meta-analysis in Nature's Communications Biology by Thomas J. Vanasse, Peter T. Fox, P. Mickle Fox, Franco Cauda, Tommaso Costa, Stephen M. Smith, Simon B. Eickhoff & Jack L. Lancaster https://www.nature.com/articles/s42003-021-01832-9 The evolution of modern human brain shape in Science Advances by Simon Neubauer, Jean-Jacques Hublin and Philipp Gunz https://pubmed.ncbi.nlm.nih.gov/29376123/ ---Chapters----- 0:00​​​​ - Intro 0:00:45​​​​ - Paper 1: Brain pathology recapitulates physiology 0:06:26​​​​ - Paper Discussion 0:11:30​​ - Paper 2: Consistency of functional connectivity across different movies 0:29:00​​​​ - Paper Discussion

#Bookreview @AllenDowney offers an interactive HTML online book to start with Bayesian statistics and uses Python to apply everyday life bayesian solutions to the medical and social world.http://allendowney.github.io/ThinkBayes2/chap14.html #Paperpitch Consistency of functional connectivity across different movies by Lixia Tian, Mengting Ye, Chen Chen, Xuyu Cao, Tianhui Shen in Neuroimage (@NeuroImage_EiC). https://www.sciencedirect.com/science/article/pii/S1053811921002032 Join us live on Zoom on Monday mornings 9:30 (Paris time) https://www.clinicalneuroanatomyseminars.com/neuroccino or subscribe to our channel for weekly science updates. #Bayes #connectivity #python ---Chapters----- 0:00​​​ - Intro 0:00:35​​​ - Book: Think Bayes Version 2 0:27:16​​​ - Book Discussion 0:33:38​ - Paper: Consistency of functional connectivity across different movies 0:48:44​​​ - Paper Discussion

#BookReview: Fundamentals of Brain Network Analysis Edited by: Alex Fornito (@AFornito), Andrew Zalesky (@AndrewZalesky) and Edward T. Bullmore (@edbullmore) Contents: https://www.sciencedirect.com/book/9780124079083/fundamentals-of-brain-network-analysis GitHub tutorial: https://github.com/multinetlab-amsterdam/network_TDA_tutorial PubPeer: https://pubpeer.com/ BordeauxTea: https://gmail.us7.list-manage.com/subscribe?u=ed3b03464216d967f080db314&id=ac4829e006 09:59:37 #Paperpitch 'Autologous transplant therapy alleviates motor and depressive behaviors in parkinsonian monkeys' by Yunlong Tao, Scott C. Vermilyea, Matthew Zammit, Jianfeng Lu, Miles Olsen, Jeanette M. Metzger, Lin Yao, Yuejun Chen, Sean Phillips, James E. Holden, Viktoriya Bondarenko, Walter F. Block, Todd E. Barnhart, Nancy Schultz-Darken, Kevin Brunner, Heather Simmons, Bradley T. Christian, Marina E. Emborg & Su-Chun Zhang in @NatureMedicine 'Long-term maturation of human cortical organoids matches key early postnatal transitions' by Aaron Gordon, Se-Jin Yoon, Stephen S. Tran, Christopher D. Makinson, Jin Young Park, Jimena Andersen, Alfredo M. Valencia, Steve Horvath, Xinshu Xiao, John R. Huguenard, Sergiu P. Pașca & Daniel H. Geschwind in @NatureNeuro #networks #parkinson #comparative ---Chapters----- 0:00​​ - Intro 0:00:43​​ - Book: Fundamentals of Brain Network Analysis 0:15:20​​ - Websites: Github tutorial, Pubpeer & BordeauxTea 0:17:42​​ - Book Discussion 0:25:44 - Paper 1: Parkinsonian monkeys 0:42:00​​ - Paper 1 Discussion 0:47:42​​ - Paper 2: Human cortical organoids

This week we had our first Science #bookreview and a review paper. If you want to present or just join the meeting live, check out how to connect with us: https://www.clinicalneuroanatomyseminars.com/neuroccino ** Book ** Myelin - the brain's supercharger by Bernard Zalc & Florance Rosier (Oxford University Press). https://global.oup.com/academic/product/myelin-9780190686093?q=zalc&lang=en&cc=fr - 425 million years ago, myelin marked a radical turning point in evolution - The brain's supercharger, myelin accelerates nerve impulses and enables reflexes and motor movement - The first-ever book that looks at myelin's role in primate evolution Myelin research explores multiple sclerosis, Guillain-Barre syndrome, Charcot-Marie-Tooth peripheral neuropathies, and other genetic diseases of myelin. ** Paper ** A Common Space Approach to Comparative Neuroscience by Rogier Mars, Saad Jbabdi & Matthew Rushworth. https://www.annualreviews.org/doi/10.1146/annurev-neuro-100220-025942?url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org&rfr_dat=cr_pub++0pubmed Comparative neuroscience is entering the era of big data. New high-throughput methods and data-sharing initiatives have resulted in the availability of large, digital data sets containing many types of data from ever more species. Here, we present a framework for exploiting the new possibilities offered. The multimodality of the data allows vertical translations, which are comparisons of different aspects of brain organization within a single species and across scales. Horizontal translations compare particular aspects of brain organization across species, often by building abstract feature spaces. Combining vertical and horizontal translations allows for more sophisticated comparisons, including relating principles of brain organization across species by contrasting horizontal translations, and for making formal predictions of unobtainable data based on observed results in a model species. #Myelin​ #glia​ #comparative #evolution​ ---Chapters----- 0:00​ - Intro 0:00:46​ - Book: Myelin - the brain's supercharger 0:10:00​ - Book Discussion 0:25:10​ - Paper: A Common Space Approach to Comparative Neuroscience 0:36:00​ - Paper Discussion

Join us live every Monday morning at 9:30am Paris time: https://www.clinicalneuroanatomyseminars.com/neuroccino Papers discussed this week: 1. Brain development is similar in Neanderthals and modern humans: https://www.cell.com/current-biology/comments/S0960-9822(16)30661-3 And we briefly talked about this one during the discussion as well: Neanderthal-like ‘mini-brains’ created in lab with CRISPR https://www.nature.com/articles/d41586-021-00388-2 2. The world’s strongest MRI machines are pushing human imaging to new limits: https://www.nature.com/articles/d41586-018-07182-7 3. Damage to Broca’s area does not contribute to long-term speech production outcome after stroke: https://academic.oup.com/brain/advance-article/doi/10.1093/brain/awaa460/6124755 #Broca #evolution #highfield ---Chapters----- 0:00 - Intro 0:01:20 - Paper 1: Neanderthals & evolution 0:07:01 - Paper 1 Discussion 0:18:23 - Paper 2: High field imaging 0:31:46 - Paper 2 Discussion 0:42:40 - Paper 3: Damage to Broca & speech production after stroke 0:56:58 - Paper 3 Discussion

Join us live every Monday morning at 9:30am Paris time: https://www.clinicalneuroanatomyseminars.com/neuroccino Papers discussed this week: 1. The Practical Alternative to the p-Value Is the Correctly Used p-Value by @lakens Daniël Lakens: https://journals.sagepub.com/doi/10.1177/1745691620958012?url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org&rfr_dat=cr_pub++0pubmed& The previous session on JASP we are referring to in the discussion can be found here: https://youtu.be/mNe2cLtt1Fw 2. High-performance brain-to-text communication via imagined handwriting: https://www.biorxiv.org/content/10.1101/2020.07.01.183384v1 ---Chapters----- 0:00​ - Intro 0:42​ - Paper 1: p-values 15:57​ - Paper 1 Discussion 31:00​ - Paper 2: Brain-to-text communication 43:38​ - Paper 2 Discussion

Join us live every Monday morning at 9:30am French time. Find all information on our website: https://www.clinicalneuroanatomyseminars.com/neuroccino Today's #Neuroccino: User-friendly advice on #fMRI #reliability by @sNeuroble @DScheinost @constable_todd in Current Opinion in Behavioral Sciences: https://sciencedirect.com/science/article/pii/S235215462030200X #Visual #hallucinations in #Parkinson's disease and Charles #Bonnet Syndrome by Timothy Lawn & Dominic ffytche @KingsIoPPN: https://www.sciencedirect.com/science/article/pii/S0010945220304342#! #fmri #reliability #hallucinations

Join us live every Monday morning at 9:30am French time. Details on how to join us are available from our website: https://www.clinicalneuroanatomysemin..., and we will keep you updated on Twitter (@CNSeminars), Facebook (https://www.facebook.com/CNSeminars), and LinkedIn (linkedin.com/company/cnseminars). Today we discussed Cross-species neuroscience: closing the explanatory gap in Philosophical Transactions of the Royal Society B: Biological Sciences (https://royalsocietypublishing.org/doi/full/10.1098/rstb.2019.0633) Axion Emission Can Explain a New Hard X-Ray Excess from Nearby Isolated Neutron Stars in PHYSICAL REVIEW LETTERS (https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.126.021102) Maximum information states for coherent scattering measurements in Nature Physics (https://www.nature.com/articles/s41567-020-01137-4) #comparative #neuroscince #stars

Details on how to join us are available from our website: https://www.clinicalneuroanatomyseminars.com/, and we will keep you updated on Twitter (@CNSeminars), Facebook (https://www.facebook.com/CNSeminars), and LinkedIn (linkedin.com/company/cnseminars). Today we discussed Denis LeBihan's 'On time and space in the brain: A relativistic pseudo-diffusion framework' in Brain Multiphysics (https://www.sciencedirect.com/science/article/pii/S2666522020300034), Gustavo Deco et al's 'Revisiting the global workspace orchestrating the hierarchical organization of the human brain' in Nature Human Behaviour (https://www.nature.com/articles/s41562-020-01003-6) and the pre-publication of 'Sex-related human brain asymmetry in hemispheric functional gradients' by Xinyu Liang et al., in NeuroImage (https://www.researchgate.net/publication/348510488_Sex-related_human_brain_asymmetry_in_hemispheric_functional_gradients). #relativistic #diffusion #brainhierarchy #brainasymmetry

This week we discussed: 1. Deep learning-based unlearning of dataset bias for MRI harmonisation and confound removal, https://www.sciencedirect.com/science/article/pii/S1053811920311745#fig0003 2. Red nucleus structure and function: from anatomy to clinical neurosciences, https://link.springer.com/article/10.1007/s00429-020-02171-x

Details on how to join us are available from our website: https://www.clinicalneuroanatomyseminars.com/neuroccino, and we will keep you updated on Twitter (@CNSeminars), Facebook (https://www.facebook.com/CNSeminars), and LinkedIn (linkedin.com/company/cnseminars). Today we discussed: 1. Implicit theories of intelligence predict achievement across an adolescent transition: a longitudinal study and an intervention by Lisa Blackwell, @KaliTJames, and Carol Sorich Dweck. https://pubmed.ncbi.nlm.nih.gov/17328703/ 2. And several papers and a book under the umbrella of 'evolution of language', which will be continued as a special Neuroccino FOXP2 and the neuroanatomy of speech and language by Faraneh Vargha-Khadem, David G. Gadian, Andrew Copp & Mortimer Mishkin https://www.nature.com/articles/nrn1605 Neuroanatomy of the grey seal brain: bringing pinnipeds into the neurobiological study of vocal learning by Nienke Hoeksema, Laura Verga, Janine Mengede, Corné van Roessel, Stella Villanueva, Anna SalazarCasals, Ana Rubio-Garcia, Branislava Ćurčić-Blake, Sonja Vernes, and Andrea Ravignani. https://www.biorxiv.org/content/10.1101/2020.12.19.423579v1.full.pdf Language in Our Brain: The Origins of a Uniquely Human Capacity, by Angela D. Friederici https://academic.oup.com/jole/article/4/1/78/5106731?login=true #intelligence #Language #neuroanatomy

Thank you all for bringing exciting science every week! We are taking a wee break and will be back **4th January 2021**! Details on how to join us are available from our website: https://www.clinicalneuroanatomyseminars.com/, and we will keep you updated on Twitter (@CNSeminars), Facebook (https://www.facebook.com/CNSeminars), and LinkedIn (linkedin.com/company/cnseminars). Today we discussed the review 'Recent advances in neurotechnologies with broad potential for neuroscience research" by Abraham Vázquez-Guardado et al. in Nature Neuroscience (https://www.nature.com/articles/s41593-020-00739-8). This was followed by an exchange about strategies to find recent papers. Here are the platforms we are using for our literature searches: - Twitter (www.twitter.com) - Researchgate (https://www.researchgate.net/ also available as an app) - Researcher (https://www.researcher-app.com/) - Feedly (https://feedly.com/i/welcome) - Google Scholar alerts (https://scholar.google.com/intl/en/scholar/help.html) - Pubmed (https://pubmed.ncbi.nlm.nih.gov/) - University newsletters and just generally follow the researchers whose papers you enjoy reading. #Neuroimaging #review #literaturesearch #pubmed #researchgate #feedly #researcher #googlescholar

Join us live every Monday morning at 9:30am French time: https://zoom.us/j/97428050844?pwd=Tk5... Meeting ID: 974 2805 0844 Passcode: 137805 Today's #neuroccino: Ca2+ imaging and #fMRI by @EvelynMRLake @constable_todd et al in @naturemethods, #corticocortical connections in #tumours by Patryk Filipiak @demwassermann et al @NeuroImage_EiC, and #tractography review by @mrym_afzali @Dee_Kay_Jay Share with friends & colleagues: https://youtu.be/dRiz1mOCnjI This week we discussed: - Simultaneous cortex-wide fluorescence Ca2+ imaging and whole-brain fMRIhttps://www.nature.com/articles/s41592-020-00984-6 - Towards linking diffusion MRI based macro- and microstructure measures with cortico-cortical transmission in brain tumor patients, https://www.sciencedirect.com/science/article/pii/S1053811920310521 - The sensitivity of diffusion MRI to microstructural properties and experimental factors, https://www.sciencedirect.com/science/article/pii/S0165027020303745 Presented by Victor Nozais (@VNozais), Michel Thiebaut de Schotten (@MichelTdS) and Lia Talozzi (@lia_talozzi). Moderated by Stephanie Forkel (@StephForkel) #sensitivity #tractography #calcium #corticocortical #braintumours

Join us live every Monday morning at 9:30am French time: https://zoom.us/j/97428050844?pwd=Tk5... Meeting ID: 974 2805 0844 Passcode: 137805 This week we discussed: - Robust Myelination of Regenerated Axons Induced by Combined Manipulations of GPR17 and Microglia, https://www.sciencedirect.com/science/article/pii/S0896627320307169 - Acute social isolation evokes midbrain craving responses similar to hunger, https://www.nature.com/articles/s41593-020-00742-z#:~:text=Across%20deprivation%20sessions%2C%20we%20found,the%20way%20fasting%20causes%20hunger. - Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells, https://www.cell.com/cell/pdf/S0092-8674(20)31254-X.pdf Presented by Aleksandr, Valerio Rubino and Lia Talozzi. Moderated by Stephanie Forkel (@StephForkel) #myelination #socialisolation #Gaba